COMPARE00967

Related Sequences

Some peptide sequences can be mapped with 100% identity to a full-length parent accession in the NCBI Protein or UniProt database. The parent sequence itself is not present in COMPARE as there is no published data to support its inclusion yet. The black arrow shows the present entry. Related peptide sequences (children) are shown as grey arrows and the parent accession is the green arrow. Clicking the green arrow in the graphic below will link out to NCBI Protein. Clicking a grey arrow will take you to the COMPARE allergen record for that entry.

Warning (2): fopen(/var/www/jifsanit-comparedb-2025/_fastatempfiles/parentaccession-XP_008286259.1.faa): failed to open stream: Permission denied [APP/Template/Allergens/view.ctp, line 138]
Code Context
                $parenttemptext = ">".$parentaccession."\n".$parentsequence;
                $myfile = fopen("/var/www/jifsanit-comparedb-2025/_fastatempfiles/parentaccession-".$parentaccession.".faa", "w") or die("Unable to write temporary parent .faa file.");
                fwrite($myfile, $parenttemptext);
$viewFile = '/var/www/jifsanit-comparedb-2025/src/Template/Allergens/view.ctp'
$dataForView = [
	'allergen' => object(App\Model\Entity\Allergen) {

		'id' => (int) 1990,
		'species' => 'Stegastes partitus',
		'common_name' => 'wolf herring',
		'definition' => 'calcium-binding protein, parvalbumin, partial from XP_008286259.1',
		'iuis_name' => '',
		'gi' => '0657565876',
		'accession' => 'COMPARE00967',
		'url_accession' => 'COMPARE00967',
		'length' => (int) 32,
		'reference' => '20757',
		'year_adopted' => '2018',
		'sequence' => 'KAFAIIDQDKSGFIEEDELKLFLQNFSAGARA
',
		'header' => '>COMPARE00967 calcium-binding protein, parvalbumin, partial from XP_008286259.1 [Stegastes partitus]',
		'parent_accession' => 'XP_008286259.1',
		'data_source' => null,
		'ncbi_taxoncode' => null,
		'notes' => 'Previous accession was XP_008286259.1. Updated in 2025.',
		'retired_by' => null,
		'is_removed' => (int) 0,
		'iuis_url' => null,
		'articles' => [
			[maximum depth reached]
		],
		'[new]' => false,
		'[accessible]' => [
			[maximum depth reached]
		],
		'[dirty]' => [[maximum depth reached]],
		'[original]' => [[maximum depth reached]],
		'[virtual]' => [[maximum depth reached]],
		'[errors]' => [[maximum depth reached]],
		'[invalid]' => [[maximum depth reached]],
		'[repository]' => 'Allergens'
	
	}
]
$allergen = object(App\Model\Entity\Allergen) {

	'id' => (int) 1990,
	'species' => 'Stegastes partitus',
	'common_name' => 'wolf herring',
	'definition' => 'calcium-binding protein, parvalbumin, partial from XP_008286259.1',
	'iuis_name' => '',
	'gi' => '0657565876',
	'accession' => 'COMPARE00967',
	'url_accession' => 'COMPARE00967',
	'length' => (int) 32,
	'reference' => '20757',
	'year_adopted' => '2018',
	'sequence' => 'KAFAIIDQDKSGFIEEDELKLFLQNFSAGARA
',
	'header' => '>COMPARE00967 calcium-binding protein, parvalbumin, partial from XP_008286259.1 [Stegastes partitus]',
	'parent_accession' => 'XP_008286259.1',
	'data_source' => null,
	'ncbi_taxoncode' => null,
	'notes' => 'Previous accession was XP_008286259.1. Updated in 2025.',
	'retired_by' => null,
	'is_removed' => (int) 0,
	'iuis_url' => null,
	'articles' => [
		(int) 0 => object(App\Model\Entity\Article) {}
	],
	'[new]' => false,
	'[accessible]' => [
		'species' => true,
		'common_name' => true,
		'definition' => true,
		'gi' => true,
		'accession' => true,
		'url_accession' => true,
		'length' => true,
		'reference' => true,
		'year_adopted' => true,
		'sequence' => true,
		'header' => true,
		'notes' => true,
		'retired_by' => true,
		'articles' => true,
		'iuis_name' => true,
		'parent_accession' => true,
		'iuis_url' => true
	],
	'[dirty]' => [],
	'[original]' => [],
	'[virtual]' => [],
	'[errors]' => [],
	'[invalid]' => [],
	'[repository]' => 'Allergens'

}
$currentaccession = 'COMPARE00967'
$conn = object(mysqli) {
	affected_rows => null
	client_info => null
	client_version => null
	connect_errno => null
	connect_error => null
	errno => null
	error => null
	error_list => null
	field_count => null
	host_info => null
	info => null
	insert_id => null
	server_info => null
	server_version => null
	stat => null
	sqlstate => null
	protocol_version => null
	thread_id => null
	warning_count => null
}
$con = object(mysqli) {
	affected_rows => null
	client_info => null
	client_version => null
	connect_errno => null
	connect_error => null
	errno => null
	error => null
	error_list => null
	field_count => null
	host_info => null
	info => null
	insert_id => null
	server_info => null
	server_version => null
	stat => null
	sqlstate => null
	protocol_version => null
	thread_id => null
	warning_count => null
}
$childquery = 'SELECT id,definition,species FROM allergens WHERE accession='COMPARE00967' LIMIT 1'
$children = object(mysqli_result) {
	current_field => null
	field_count => null
	lengths => null
	num_rows => null
	type => null
}
$i = (int) 0
$child = [
	'id' => '1990',
	'definition' => 'calcium-binding protein, parvalbumin, partial from XP_008286259.1',
	'species' => 'Stegastes partitus'
]
$childid = '1990'
$childdefinition = 'calcium-binding protein, parvalbumin, partial from XP_008286259.1'
$childspecies = 'Stegastes partitus'
$parentmatches = object(mysqli_result) {
	current_field => null
	field_count => null
	lengths => null
	num_rows => null
	type => null
}
$parentmatch = [
	'parent_id' => '160'
]
$parentid = '160'
$parent = object(mysqli_result) {
	current_field => null
	field_count => null
	lengths => null
	num_rows => null
	type => null
}
$parentaccession = 'XP_008286259.1'
$row = [
	(int) 0 => '160',
	(int) 1 => 'XP_008286259.1',
	(int) 2 => 'MAFAGVLNDAEITAALDACKAADSFDYKAFFKSCGLAGKSADDVKKAFAIIDQDKSGFIEEDELKLFLQNFSAGARALTDAETKAFLKAGDSDGDGKIGADEFAALVKA',
	(int) 3 => '109'
]
$parentsequence = 'MAFAGVLNDAEITAALDACKAADSFDYKAFFKSCGLAGKSADDVKKAFAIIDQDKSGFIEEDELKLFLQNFSAGARALTDAETKAFLKAGDSDGDGKIGADEFAALVKA'
$parenttemptext = '>XP_008286259.1
MAFAGVLNDAEITAALDACKAADSFDYKAFFKSCGLAGKSADDVKKAFAIIDQDKSGFIEEDELKLFLQNFSAGARALTDAETKAFLKAGDSDGDGKIGADEFAALVKA'
fopen - [internal], line ??
include - APP/Template/Allergens/view.ctp, line 138
Cake\View\View::_evaluate() - CORE/src/View/View.php, line 1240
Cake\View\View::_render() - CORE/src/View/View.php, line 1201
Cake\View\View::render() - CORE/src/View/View.php, line 803
Cake\Controller\Controller::render() - CORE/src/Controller/Controller.php, line 790
Cake\Http\ActionDispatcher::_invoke() - CORE/src/Http/ActionDispatcher.php, line 126
Cake\Http\ActionDispatcher::dispatch() - CORE/src/Http/ActionDispatcher.php, line 94
Cake\Http\BaseApplication::__invoke() - CORE/src/Http/BaseApplication.php, line 235
Cake\Http\Runner::__invoke() - CORE/src/Http/Runner.php, line 65
Cake\Http\Middleware\CsrfProtectionMiddleware::__invoke() - CORE/src/Http/Middleware/CsrfProtectionMiddleware.php, line 107
Cake\Http\Runner::__invoke() - CORE/src/Http/Runner.php, line 65
Cake\Routing\Middleware\RoutingMiddleware::__invoke() - CORE/src/Routing/Middleware/RoutingMiddleware.php, line 156
Cake\Http\Runner::__invoke() - CORE/src/Http/Runner.php, line 65
Cake\Routing\Middleware\AssetMiddleware::__invoke() - CORE/src/Routing/Middleware/AssetMiddleware.php, line 88
Cake\Http\Runner::__invoke() - CORE/src/Http/Runner.php, line 65
Cake\Error\Middleware\ErrorHandlerMiddleware::__invoke() - CORE/src/Error/Middleware/ErrorHandlerMiddleware.php, line 98